inbreedR | Installation | inbreedR contains the following functions: | Example datasets | Data format and checking | Conversion from a more common format | Loading and extracting genotype information from VCF files | A short theory of heterozygosity-fitness correlations (HFC) | Identity disequilibrium | HFC parameters | Workflow for estimating the impact of inbreeding on fitness using HFC | Sensitivity to the number of genetic markers | Note on calculating g2 for real-world SNP datasets | Extracting raw data from inbreedR objects | Literature
Package: inbreedR 0.3.3
inbreedR: Analysing Inbreeding Based on Genetic Markers
A framework for analysing inbreeding and heterozygosity-fitness correlations (HFCs) based on microsatellite and SNP markers.
Authors:
inbreedR_0.3.3.tar.gz
inbreedR_0.3.3.zip(r-4.7-any)inbreedR_0.3.3.zip(r-4.6-any)inbreedR_0.3.3.zip(r-4.5-any)
inbreedR_0.3.3.tgz(r-4.6-any)inbreedR_0.3.3.tgz(r-4.5-any)
inbreedR_0.3.3.tar.gz(r-4.7-any)inbreedR_0.3.3.tar.gz(r-4.6-any)
inbreedR_0.3.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
inbreedR/json (API)
| # Install 'inbreedR' in R: |
| install.packages('inbreedR', repos = c('https://mastoffel.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/mastoffel/inbreedr/issues
Datasets:
- bodyweight - Oldfield mouse bodyweight data
- mouse_msats - Oldfield mouse microsatellite data
- mouse_snps - Oldfield mouse SNP data
Last updated from:01c8125038. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 116 | ||
| source / vignettes | OK | 230 | ||
| linux-release | OK | 143 | ||
| macos-release | OK | 118 | ||
| macos-oldrel | OK | 93 | ||
| windows-devel | OK | 70 | ||
| windows-release | OK | 95 | ||
| windows-oldrel | OK | 80 | ||
| wasm-release | OK | 81 |
Exports:check_dataconvert_rawg2_microsatsg2_snpsHHCMLHr2_hfr2_Wfsimulate_g2simulate_r2_hfsMLH
Dependencies:data.table
